fix: Move ragenix to externally managed, and ask for env file references

flake.nix

@@ -4,15 +4,9 @@
   inputs = {
     nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable";
     flake-utils.url = "github:numtide/flake-utils";
-    
-    # For secrets management
-    ragenix = {
-      url = "github:yaxitech/ragenix";
-      inputs.nixpkgs.follows = "nixpkgs";
-    };
   };
 
-  outputs = { self, nixpkgs, flake-utils, ragenix }:
+  outputs = { self, nixpkgs, flake-utils }:
     flake-utils.lib.eachDefaultSystem (system:
       let
         pkgs = import nixpkgs {
@@ -63,11 +57,6 @@
             # Camera SDK
             camera-sdk
             
-            # Secrets management
-            ragenix.packages.${system}.default
-            age
-            ssh-to-age
-            
             # Utilities
             jq
             yq
@@ -94,83 +83,18 @@
             echo "Available commands:"
             echo "  - docker-compose: Manage containers"
             echo "  - supabase: Supabase CLI"
-            echo "  - ragenix: Manage encrypted secrets"
-            echo "  - age: Encrypt/decrypt files"
             echo ""
             echo "To activate Python venv: source .venv/bin/activate"
             echo "To edit secrets: ragenix -e secrets/env.age"
             echo ""
+            echo "NOTE: Secrets should be managed by ragenix in athenix for production deployments"
+            echo ""
           '';
 
           # Additional environment configuration
           DOCKER_BUILDKIT = "1";
           COMPOSE_DOCKER_CLI_BUILD = "1";
         };
-
-        # NixOS module for easy integration
-        nixosModules.default = { config, lib, ... }: {
-          options.services.usda-vision = {
-            enable = lib.mkEnableOption "USDA Vision camera management system";
-            
-            secretsFile = lib.mkOption {
-              type = lib.types.path;
-              description = "Path to the ragenix-managed secrets file";
-            };
-            
-            dataDir = lib.mkOption {
-              type = lib.types.str;
-              default = "/var/lib/usda-vision";
-              description = "Directory for USDA Vision application data";
-            };
-          };
-
-          config = lib.mkIf config.services.usda-vision.enable {
-            environment.systemPackages = [
-              usda-vision-package
-              camera-sdk
-              pkgs.docker-compose
-            ];
-
-            environment.variables.LD_LIBRARY_PATH = "${camera-sdk}/lib";
-
-            virtualisation.docker = {
-              enable = true;
-              autoPrune.enable = true;
-            };
-
-            systemd.services.usda-vision = {
-              description = "USDA Vision Docker Compose Stack";
-              after = [ "docker.service" "network-online.target" ];
-              wants = [ "network-online.target" ];
-              wantedBy = [ "multi-user.target" ];
-
-              preStart = ''
-                # Sync application code
-                ${pkgs.rsync}/bin/rsync -av --delete \
-                  --checksum \
-                  --exclude='node_modules' \
-                  --exclude='.env' \
-                  --exclude='__pycache__' \
-                  --exclude='.venv' \
-                  ${usda-vision-package}/opt/usda-vision/ ${config.services.usda-vision.dataDir}/
-
-                # Copy secrets if managed by ragenix
-                if [ -f "${config.services.usda-vision.secretsFile}" ]; then
-                  cp "${config.services.usda-vision.secretsFile}" ${config.services.usda-vision.dataDir}/.env
-                fi
-              '';
-
-              serviceConfig = {
-                Type = "oneshot";
-                RemainAfterExit = true;
-                WorkingDirectory = config.services.usda-vision.dataDir;
-                ExecStart = "${pkgs.docker-compose}/bin/docker-compose up -d --build";
-                ExecStop = "${pkgs.docker-compose}/bin/docker-compose down";
-                TimeoutStartSec = 300;
-              };
-            };
-          };
-        };
       }
     );
 }